Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

Simeon U. Springer; Chung Hsin Chen; Maria Del Carmen Rodriguez Pena; Lu Li; Christopher Douville; Yuxuan Wang; Joshua David Cohen; Diana Taheri; Natalie Silliman; Joy Schaefer; Janine Ptak; Lisa Dobbyn; Maria Papoli; Isaac Kinde; Bahman Afsari; Aline C. Tregnago; Stephania M. Bezerra; Christopher Vandenbussche; Kazutoshi Fujita; Dilek Ertoy; Isabela W. Cunha; Lijia Yu; Trinity J. Bivalacqua; Arthur P. Grollman; Luis A. Diaz; Rachel Karchin; Ludmila Danilova; Chao Yuan Huang; Chia Tung Shun; Robert J. Turesky; Byeong Hwa Yun; Thomas A. Rosenquist; Yeong Shiau Pu; Ralph H. Hruban; Cristian Tomasetti; Nickolas Papadopoulos; Ken W. Kinzler; Bert Vogelstein; Kathleen G. Dickman; George J. Netto

doi:10.7554/eLife.32143

Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

Simeon U. Springer, Chung Hsin Chen, Maria Del Carmen Rodriguez Pena, Lu Li, Christopher Douville, Yuxuan Wang, Joshua David Cohen, Diana Taheri, Natalie Silliman, Joy Schaefer, Janine Ptak, Lisa Dobbyn, Maria Papoli, Isaac Kinde, Bahman Afsari, Aline C. Tregnago, Stephania M. Bezerra, Christopher Vandenbussche, Kazutoshi Fujita, Dilek ErtoyIsabela W. Cunha, Lijia Yu, Trinity J. Bivalacqua, Arthur P. Grollman, Luis A. Diaz, Rachel Karchin, Ludmila Danilova, Chao Yuan Huang, Chia Tung Shun, Robert J. Turesky, Byeong Hwa Yun, Thomas A. Rosenquist, Yeong Shiau Pu, Ralph H. Hruban, Cristian Tomasetti, Nickolas Papadopoulos, Ken W. Kinzler, Bert Vogelstein, Kathleen G. Dickman, George J. Netto

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Abstract

Current non-invasive approaches for detection of urothelial cancers are suboptimal. We developed a test to detect urothelial neoplasms using DNA recovered from cells shed into urine. UroSEEK incorporates massive parallel sequencing assays for mutations in 11 genes and copy number changes on 39 chromosome arms. In 570 patients at risk for bladder cancer (BC), UroSEEK was positive in 83% of those who developed BC. Combined with cytology, UroSEEK detected 95% of patients who developed BC. Of 56 patients with upper tract urothelial cancer, 75% tested positive by UroSEEK, including 79% of those with non-invasive tumors. UroSEEK detected genetic abnormalities in 68% of urines obtained from BC patients under surveillance who demonstrated clinical evidence of recurrence. The advantages of UroSEEK over cytology were evident in low-grade BCs; UroSEEK detected 67% of cases whereas cytology detected none. These results establish the foundation for a new non-invasive approach for detection of urothelial cancer.

Original language	English (US)
Article number	e32143
Journal	eLife
Volume	7
DOIs	https://doi.org/10.7554/eLife.32143
State	Published - Mar 20 2018

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© Springer et al.

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Springer, S. U., Chen, C. H., Del Carmen Rodriguez Pena, M., Li, L., Douville, C., Wang, Y., Cohen, J. D., Taheri, D., Silliman, N., Schaefer, J., Ptak, J., Dobbyn, L., Papoli, M., Kinde, I., Afsari, B., Tregnago, A. C., Bezerra, S. M., Vandenbussche, C., Fujita, K., ... Netto, G. J. (2018). Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy. eLife, 7, Article e32143. https://doi.org/10.7554/eLife.32143

Springer, SU, Chen, CH, Del Carmen Rodriguez Pena, M, Li, L, Douville, C, Wang, Y, Cohen, JD, Taheri, D, Silliman, N, Schaefer, J, Ptak, J, Dobbyn, L, Papoli, M, Kinde, I, Afsari, B, Tregnago, AC, Bezerra, SM, Vandenbussche, C, Fujita, K, Ertoy, D, Cunha, IW, Yu, L, Bivalacqua, TJ, Grollman, AP, Diaz, LA, Karchin, R, Danilova, L, Huang, CY, Shun, CT, Turesky, RJ, Yun, BH, Rosenquist, TA, Pu, YS, Hruban, RH, Tomasetti, C, Papadopoulos, N, Kinzler, KW, Vogelstein, B, Dickman, KG & Netto, GJ 2018, 'Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy', eLife, vol. 7, e32143. https://doi.org/10.7554/eLife.32143

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abstract = "Current non-invasive approaches for detection of urothelial cancers are suboptimal. We developed a test to detect urothelial neoplasms using DNA recovered from cells shed into urine. UroSEEK incorporates massive parallel sequencing assays for mutations in 11 genes and copy number changes on 39 chromosome arms. In 570 patients at risk for bladder cancer (BC), UroSEEK was positive in 83% of those who developed BC. Combined with cytology, UroSEEK detected 95% of patients who developed BC. Of 56 patients with upper tract urothelial cancer, 75% tested positive by UroSEEK, including 79% of those with non-invasive tumors. UroSEEK detected genetic abnormalities in 68% of urines obtained from BC patients under surveillance who demonstrated clinical evidence of recurrence. The advantages of UroSEEK over cytology were evident in low-grade BCs; UroSEEK detected 67% of cases whereas cytology detected none. These results establish the foundation for a new non-invasive approach for detection of urothelial cancer.",

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AU - Chen, Chung Hsin

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AU - Li, Lu

AU - Douville, Christopher

AU - Wang, Yuxuan

AU - Cohen, Joshua David

AU - Taheri, Diana

AU - Silliman, Natalie

AU - Schaefer, Joy

AU - Ptak, Janine

AU - Dobbyn, Lisa

AU - Papoli, Maria

AU - Kinde, Isaac

AU - Afsari, Bahman

AU - Tregnago, Aline C.

AU - Bezerra, Stephania M.

AU - Vandenbussche, Christopher

AU - Fujita, Kazutoshi

AU - Ertoy, Dilek

AU - Cunha, Isabela W.

AU - Yu, Lijia

AU - Bivalacqua, Trinity J.

AU - Grollman, Arthur P.

AU - Diaz, Luis A.

AU - Karchin, Rachel

AU - Danilova, Ludmila

AU - Huang, Chao Yuan

AU - Shun, Chia Tung

AU - Turesky, Robert J.

AU - Yun, Byeong Hwa

AU - Rosenquist, Thomas A.

AU - Pu, Yeong Shiau

AU - Hruban, Ralph H.

AU - Tomasetti, Cristian

AU - Papadopoulos, Nickolas

AU - Kinzler, Ken W.

AU - Vogelstein, Bert

AU - Dickman, Kathleen G.

AU - Netto, George J.

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Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

Abstract

Bibliographical note

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