Biochemistry, Molecular Biology, and Biophysics (CBS)

2023

An NMR portrait of functional and dysfunctional allosteric cooperativity in cAMP-dependent protein kinase A

Olivieri, C., Walker, C., Veliparambil Subrahmanian, M., Porcelli, F., Taylor, S. S., Bernlohr, D. A. & Veglia, G., Apr 2023, In: FEBS Letters. 597, 8, p. 1055-1072 18 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

4 Scopus citations

Discovery of Modified Metabolites, Secondary Metabolites, and Xenobiotics by Structure-Oriented LC-MS/MS

Murray, K. J., Villalta, P. W., Griffin, T. J. & Balbo, S., Nov 20 2023, In: Chemical research in toxicology. 36, 11, p. 1666-1682 17 p.

Research output: Contribution to journal › Review article › peer-review

From nature to industry: Harnessing enzymes for biocatalysis

Buller, R., Lutz, S., Kazlauskas, R. J., Snajdrova, R., Moore, J. C. & Bornscheuer, U. T., Dec 25 2023, In: Science. 382, 6673, eadh8615.

Research output: Contribution to journal › Review article › peer-review

27 Scopus citations

Microbes and hydrothermal environments: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology

Wackett, L. P., Feb 2023, In: Environmental microbiology reports. 15, 1, p. 72-73 2 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

Microbial global transport: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology

Wackett, L. P., Apr 1 2023, In: Environmental microbiology reports. 15, 2, p. 153-154 2 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

The Role of NAD⁺ in Metabolic Regulation of Adipose Tissue: Implications for Obesity-Induced Insulin Resistance

Ruskovska, T. & Bernlohr, D. A., Sep 2023, In: Biomedicines. 11, 9, 2560.

Research output: Contribution to journal › Review article › peer-review

Open Access

2022

Cellular Senescence in Obesity and Associated Complications: a New Therapeutic Target

Narasimhan, A., Flores, R. R., Camell, C. D., Bernlohr, D. A., Robbins, P. D. & Niedernhofer, L. J., Nov 2022, In: Current diabetes reports. 22, 11, p. 537-548 12 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

6 Scopus citations

Harnessing intercellular signals to engineer the soil microbiome

Connolly, J. A., Harcombe, W. R., Smanski, M. J., Kinkel, L. L., Takano, E. & Breitling, R., Feb 2022, In: Natural Product Reports. 39, 2, p. 311-324 14 p.

Research output: Contribution to journal › Review article › peer-review

1 Scopus citations

Immune Modulation of Adipocyte Mitochondrial Metabolism

Hertzel, A. V., Yong, J., Chen, X. & Bernlohr, D. A., Aug 1 2022, In: Endocrinology. 163, 8, 094.

Research output: Contribution to journal › Review article › peer-review

Open Access

5 Scopus citations

Microbes controlling plant pathogens: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology

Wackett, L. P., Oct 1 2022, In: Environmental microbiology reports. 14, 5, p. 829-830 2 p.

Research output: Contribution to journal › Review article › peer-review

Nothing lasts forever: understanding microbial biodegradation of polyfluorinated compounds and perfluorinated alkyl substances

Wackett, L. P., Mar 2022, In: Microbial biotechnology. 15, 3, p. 773-792 20 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

53 Scopus citations

Obesity and Pancreatic Cancer: Recent Progress in Epidemiology, Mechanisms and Bariatric Surgery

Shinoda, S., Nakamura, N., Roach, B., Bernlohr, D. A., Ikramuddin, S. & Yamamoto, M., Jun 2022, In: Biomedicines. 10, 6, 1284.

Research output: Contribution to journal › Review article › peer-review

Open Access

6 Scopus citations

Strategies for the Biodegradation of Polyfluorinated Compounds

Wackett, L. P., Aug 2022, In: Microorganisms. 10, 8, 1664.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Scopus citations

2021

APOBECs and herpesviruses

Cheng, A. Z., Moraes, S. N., Shaban, N. M., Fanunza, E., Bierle, C. J., Southern, P. J., Bresnahan, W. A., Rice, S. A. & Harris, R. S., Mar 2021, In: Viruses. 13, 3, 390.

Research output: Contribution to journal › Review article › peer-review

Open Access

31 Scopus citations

Control of the insect metamorphic transition by ecdysteroid production and secretion

Pan, X., Connacher, R. P. & O'Connor, M. B., Feb 2021, In: Current Opinion in Insect Science. 43, p. 11-20 10 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

50 Scopus citations

De novo proteins from random sequences through in vitro evolution

Tong, C. L., Lee, K. H. & Seelig, B., Jun 2021, In: Current Opinion in Structural Biology. 68, p. 129-134 6 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Scopus citations

De novo proteins from random sequences through in vitro evolution

Tong, C. L., Lee, K. H. & Seelig, B., Jun 2021, In: Current Opinion in Structural Biology. 68, p. 129-134 6 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Scopus citations

Dual Functionality of HIV-1 Vif in APOBEC3 Counteraction and Cell Cycle Arrest

Salamango, D. J. & Harris, R. S., Jan 12 2021, In: Frontiers in Microbiology. 11, 622012.

Research output: Contribution to journal › Review article › peer-review

Open Access

14 Scopus citations

Ethanolamine bacterial microcompartments: from structure, function studies to bioengineering applications

Pokhrel, A., Kang, S. Y. & Schmidt-Dannert, C., Aug 2021, In: Current Opinion in Microbiology. 62, p. 28-37 10 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Scopus citations

Molecular and biological functions of TRIM-NHL RNA-binding proteins

Connacher, R. P. & Goldstrohm, A. C., Mar 1 2021, In: Wiley Interdisciplinary Reviews: RNA. 12, 2, e1620.

Research output: Contribution to journal › Review article › peer-review

18 Scopus citations

Why is the biodegradation of polyfluorinated compounds so rare?

Wackett, L. P., Oct 2021, In: mSphere. 6, 5, e00721-21.

Research output: Contribution to journal › Review article › peer-review

Open Access

24 Scopus citations

2020

CRISPR-Cas Activators for Engineering Gene Expression in Higher Eukaryotes

Armando Casas-Mollano, J., Zinselmeier, M. H., Erickson, S. E. & Smanski, M. J., Oct 1 2020, In: CRISPR Journal. 3, 5, p. 350-364 15 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

30 Scopus citations

Engineering acyl-homoserine lactone-interfering enzymes toward bacterial control

Billot, R., Plener, L., Jacquet, P., Elias, M., Chabrière, E. & Daudé, D., Sep 11 2020, In: Journal of Biological Chemistry. 295, 37, p. 12993-13007 15 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

39 Scopus citations

High throughput sequencing of: In vitro selections of mRNA-displayed peptides: Data analysis and applications

Blanco, C., Verbanic, S., Seelig, B. & Chen, I. A., Mar 28 2020, In: Physical Chemistry Chemical Physics. 22, 12, p. 6492-6506 15 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

10 Scopus citations

In Vitro Selection of Peptides and Proteins-Advantages of mRNA Display

Newton, M. S., Cabezas-Perusse, Y., Tong, C. L. & Seelig, B., Feb 21 2020, In: ACS Synthetic Biology. 9, 2, p. 181-190 10 p.

Research output: Contribution to journal › Review article › peer-review

54 Scopus citations

Mtor-coordinated post-transcriptional gene regulations: From fundamental to pathogenic insights

Yeh, H. S. & Yong, J., Jan 2020, In: Journal of Lipid and Atherosclerosis. 9, 1, p. 8-22 15 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Scopus citations

Quorum quenching enzymes and their effects on virulence, biofilm, and microbiomes: a review of recent advances

Sikdar, R. & Elias, M., 2020, In: Expert review of anti-infective therapy. 18, 12, p. 1221-1233 13 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

73 Scopus citations

The ever-expanding limits of enzyme catalysis and biodegradation: Polyaromatic, polychlorinated, polyfluorinated, and polymeric compounds

Wackett, L. P. & Robinson, S. L., Aug 2020, In: Biochemical Journal. 477, 15, p. 2875-2891 17 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

31 Scopus citations

The interplay of phenotype and genotype in Cryptococcus neoformans disease

Altamirano, S., Jackson, K. M. & Nielsen, K., Oct 16 2020, In: Bioscience Reports. 40, 10, BSR20190337.

Research output: Contribution to journal › Review article › peer-review

Open Access

22 Scopus citations

2019

A titanic drug resistance threat in Cryptococcus neoformans

Zafar, H., Altamirano, S., Ballou, E. R. & Nielsen, K., Dec 2019, In: Current Opinion in Microbiology. 52, p. 158-164 7 p.

Research output: Contribution to journal › Review article › peer-review

37 Scopus citations

Biological control of invasive fish and aquatic invertebrates: A brief review with case studies

Bajer, P. G., Ghosal, R., Maselko, M., Smanski, M. J., Lechelt, J. D., Hansen, G. & Kornis, M. S., Jun 2019, In: Management of Biological Invasions. 10, 2, p. 227-254 28 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

18 Scopus citations

Biosynthesis and chemical diversity of β-lactone natural products

Robinson, S. L., Christenson, J. K. & Wackett, L. P., Mar 2019, In: Natural Product Reports. 36, 3, p. 458-475 18 p.

Research output: Contribution to journal › Review article › peer-review

100 Scopus citations

Mechanisms of DNA damage tolerance: post-translational regulation of PCNA

Leung, W., Baxley, R. M., Moldovan, G. L. & Bielinsky, A. K., Jan 1 2019, In: Genes. 10, 1, 10.

Research output: Contribution to journal › Review article › peer-review

Open Access

54 Scopus citations

2018

APOBEC Enzymes as Targets for Virus and Cancer Therapy

Olson, M. E., Harris, R. S. & Harki, D. A., Jan 18 2018, In: Cell Chemical Biology. 25, 1, p. 36-49 14 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

108 Scopus citations

Calprotectin and the Initiation and Progression of Head and Neck Cancer

Argyris, P. P., Slama, Z. M., Ross, K. F., Khammanivong, A. & Herzberg, M. C., Jun 1 2018, In: Journal of dental research. 97, 6, p. 674-682 9 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

36 Scopus citations

Current Progress in the Structural and Biochemical Characterization of Proteins Involved in the Assembly of Lipopolysaccharide

Bohl, T. E. & Aihara, H., 2018, In: International Journal of Microbiology. 2018, 5319146.

Research output: Contribution to journal › Review article › peer-review

Open Access

13 Scopus citations

Interference in bacterial quorum sensing: A biopharmaceutical perspective

Rémy, B., Mion, S., Plener, L., Elias, M., Chabrière, E. & Daudé, D., Mar 7 2018, In: Frontiers in Pharmacology. 9, MAR, 203.

Research output: Contribution to journal › Review article › peer-review

Open Access

201 Scopus citations

Perspective: APOBEC mutagenesis in drug resistance and immune escape in HIV and cancer evolution

Venkatesan, S., Rosenthal, R., Kanu, N., McGranahan, N., Bartek, J., Quezada, S. A., Hare, J., Harris, R. S. & Swanton, C., Mar 1 2018, In: Annals of Oncology. 29, 3, p. 563-572 10 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

110 Scopus citations

Probing protein-protein interactions using asymmetric labeling and carbonyl-carbon selective heteronuclear NMR spectroscopy

Larsen, E. K., Olivieri, C., Walker, C., Manu, V. S., Gao, J., Bernlohr, D. A., Tonelli, M., Markley, J. L. & Veglia, G., 2018, In: Molecules. 23, 8, 1937.

Research output: Contribution to journal › Review article › peer-review

Open Access

9 Scopus citations

2017

Alternative polyadenylation in human diseases

Chang, J. W., Yeh, H. S. & Yong, J., Dec 1 2017, In: Endocrinology and Metabolism. 32, 4, p. 413-421 9 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

29 Scopus citations

European contribution to the study of ROS: A summary of the findings and prospects for the future from the COST action BM1203 (EU-ROS)

Egea, J., Fabregat, I., Frapart, Y. M., Ghezzi, P., Görlach, A., Kietzmann, T., Kubaichuk, K., Knaus, U. G., Lopez, M. G., Olaso-Gonzalez, G., Petry, A., Schulz, R., Vina, J., Winyard, P., Abbas, K., Ademowo, O. S., Afonso, C. B., Andreadou, I., Antelmann, H., Antunes, F., & 131 othersAslan, M., Bachschmid, M. M., Barbosa, R. M., Belousov, V., Berndt, C., Bernlohr, D., Bertrán, E., Bindoli, A., Bottari, S. P., Brito, P. M., Carrara, G., Casas, A. I., Chatzi, A., Chondrogianni, N., Conrad, M., Cooke, M. S., Costa, J. G., Cuadrado, A., My-Chan Dang, P., De Smet, B., Debelec-Butuner, B., Dias, I. H. K., Dunn, J. D., Edson, A. J., El Assar, M., El-Benna, J., Ferdinandy, P., Fernandes, A. S., Fladmark, K. E., Förstermann, U., Giniatullin, R., Giricz, Z., Görbe, A., Griffiths, H., Hampl, V., Hanf, A., Herget, J., Hernansanz-Agustín, P., Hillion, M., Huang, J., Ilikay, S., Jansen-Dürr, P., Jaquet, V., Joles, J. A., Kalyanaraman, B., Kaminskyy, D., Karbaschi, M., Kleanthous, M., Klotz, L. O., Korac, B., Korkmaz, K. S., Koziel, R., Kračun, D., Krause, K. H., Křen, V., Krieg, T., Laranjinha, J., Lazou, A., Li, H., Martínez-Ruiz, A., Matsui, R., McBean, G. J., Meredith, S. P., Messens, J., Miguel, V., Mikhed, Y., Milisav, I., Milković, L., Miranda-Vizuete, A., Mojović, M., Monsalve, M., Mouthuy, P. A., Mulvey, J., Münzel, T., Muzykantov, V., Nguyen, I. T. N., Oelze, M., Oliveira, N. G., Palmeira, C. M., Papaevgeniou, N., Pavićević, A., Pedre, B., Peyrot, F., Phylactides, M., Pircalabioru, G. G., Pitt, A. R., Poulsen, H. E., Prieto, I., Rigobello, M. P., Robledinos-Antón, N., Rodríguez-Mañas, L., Rolo, A. P., Rousset, F., Ruskovska, T., Saraiva, N., Sasson, S., Schröder, K., Semen, K., Seredenina, T., Shakirzyanova, A., Smith, G. L., Soldati, T., Sousa, B. C., Spickett, C. M., Stancic, A., Stasia, M. J., Steinbrenner, H., Stepanić, V., Steven, S., Tokatlidis, K., Tuncay, E., Turan, B., Ursini, F., Vacek, J., Vajnerova, O., Valentová, K., Van Breusegem, F., Varisli, L., Veal, E. A., Yalçın, A. S., Yelisyeyeva, O., Žarković, N., Zatloukalová, M., Zielonka, J., Touyz, R. M., Papapetropoulos, A., Grune, T., Lamas, S., Schmidt, H. H. H. W., Di Lisa, F. & Daiber, A., Oct 2017, In: Redox Biology. 13, p. 94-162 69 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

246 Scopus citations

La décontamination des organophosphorés : vers de nouvelles alternatives

Translated title of the contribution: Decontamination of organophosphorus compounds: Towards new alternativesPoirier, L., Jacquet, P., Elias, M., Daudé, D. & Chabrière, E., May 2017, In: Annales Pharmaceutiques Francaises. 75, 3, p. 209-226 18 p.

Research output: Contribution to journal › Review article › peer-review

6 Scopus citations

NMR Studies of Large Proteins

Jiang, Y. & Kalodimos, C., Aug 18 2017, In: Journal of Molecular Biology. 429, 17, p. 2667-2676 10 p.

Research output: Contribution to journal › Review article › peer-review

57 Scopus citations

Structures of Large Protein Complexes Determined by Nuclear Magnetic Resonance Spectroscopy

Huang, C. & Kalodimos, C. G., May 22 2017, In: Annual Review of Biophysics. 46, p. 317-336 20 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

57 Scopus citations

2016

A community resource of experimental data for NMR / X-ray crystal structure pairs

Everett, J. K., Tejero, R., Murthy, S. B. K., Acton, T. B., Aramini, J. M., Baran, M. C., Benach, J., Cort, J. R., Eletsky, A., Forouhar, F., Guan, R., Kuzin, A. P., Lee, H. W., Liu, G., Mani, R., Mao, B., Mills, J. L., Montelione, A. F., Pederson, K., Powers, R., & 16 othersRamelot, T., Rossi, P., Seetharaman, J., Snyder, D., Swapna, G. V. T., Vorobiev, S. M., Wu, Y., Xiao, R., Yang, Y., Arrowsmith, C. H., Hunt, J. F., Kennedy, M. A., Prestegard, J. H., Szyperski, T., Tong, L. & Montelione, G. T., Jan 1 2016, In: Protein Science. 25, 1, p. 30-45 16 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

21 Scopus citations

Alternative polyadenylation of mRNAs: 3'-untranslated region matters in gene expression

Yeh, H. S. & Yong, J., Apr 1 2016, In: Molecules and cells. 39, 4, p. 281-285 5 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

40 Scopus citations

Biocatalytic portfolio of Basidiomycota

Schmidt-Dannert, C., Apr 1 2016, In: Current opinion in chemical biology. 31, p. 40-49 10 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

58 Scopus citations

Des enzymes pour bloquer la communication bactérienne, une alternative aux antibiotiques ?

Translated title of the contribution: Enzymes for disrupting bacterial communication, an alternative to antibiotics?Rémy, B., Plener, L., Elias, M., Daudé, D. & Chabrière, E., Nov 1 2016, In: Annales Pharmaceutiques Francaises. 74, 6, p. 413-420 8 p.

Research output: Contribution to journal › Review article › peer-review

13 Scopus citations

Evolutionary Paradigms from Ancient and Ongoing Conflicts between the Lentiviral Vif Protein and Mammalian APOBEC3 Enzymes

Harris, R. S. & Anderson, B. D., Dec 1 2016, In: PLoS pathogens. 12, 12, e1005958.

Research output: Contribution to journal › Review article › peer-review

Open Access

20 Scopus citations

Polytheonamide biosynthesis showcasing the metabolic potential of sponge-associated uncultivated 'Entotheonella' bacteria

Freeman, M. F., Vagstad, A. L. & Piel, J., Apr 1 2016, In: Current opinion in chemical biology. 31, p. 8-14 7 p.

Research output: Contribution to journal › Review article › peer-review

48 Scopus citations

Biochemistry, Molecular Biology, and Biophysics (CBS)

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